docs: generalize health dashboard runbook paths

* wip: preserve worker changes on abnormal exit

* docs: document health dashboard remediation

* chore: drop restored metadata marker

.ai-workflows/bug-fixing.md

@@ -144,12 +144,12 @@ Apply the minimal fix necessary to address the critical issue.
 
 Increment the PATCH version and update all version numbers:
 
-- Main plugin file (fix-plugin-does-not-exist-notices.php)
+- Main plugin file (wp-fix-plugin-does-not-exist-notices.php)
 - FPDEN_VERSION constant
 - CHANGELOG.md
 - readme.txt
 - README.md
-- languages/fix-plugin-does-not-exist-notices.pot (Project-Id-Version)
+- languages/wp-fix-plugin-does-not-exist-notices.pot (Project-Id-Version)
 
 ### 4. Commit and Push
 

.ai-workflows/feature-development.md

@@ -27,7 +27,6 @@ When implementing a new feature:
 - Add appropriate comments
 - Consider performance implications
 - Maintain backward compatibility
-- Review reference plugins in the `reference-plugins/` directory for inspiration and best practices
 
 ### 3. Update Documentation
 

.ai-workflows/folder-structure.md

@@ -16,10 +16,6 @@ This document outlines the folder structure of the plugin and explains the purpo
 
 - **admin/css/** - Admin-specific CSS files
 - **admin/js/** - Admin-specific JavaScript files
-- **admin/images/** - Admin-specific images
-- **admin/partials/** - Admin-specific template partials
-- **admin/settings/** - Admin settings functionality
-- **admin/tools/** - Admin tools functionality
 - **admin/lib/** - Admin-specific library files and helper functions
   - **admin/lib/admin.php** - Admin class for handling admin-specific functionality
   - **admin/lib/modal.php** - Modal class for handling the update source selector modal
@@ -28,13 +24,14 @@ This document outlines the folder structure of the plugin and explains the purpo
 
 The `includes/` directory contains the core plugin functionality:
 
-- **includes/core.php** - Core class for handling the main plugin functionality
-- **includes/plugin.php** - Main plugin class that initializes all components
-- **includes/updater.php** - Updater class for handling plugin updates
+- **includes/Core.php** - Core class for handling the main plugin functionality
+- **includes/Plugin.php** - Main plugin class that initializes all components
+- **includes/Updater.php** - Updater class for handling plugin updates
 
 ## File Naming Conventions
 
-- All PHP files in the `includes/` directory use lowercase filenames
+- PHP class files in the `includes/` directory use PascalCase filenames matching the class name (e.g., `Core.php`, `Plugin.php`, `Updater.php`)
+- PHP files in `admin/lib/` use lowercase filenames (e.g., `admin.php`, `modal.php`)
 - All directories use lowercase names
 - JavaScript and CSS files use kebab-case (e.g., `update-source-selector.js`)
 
@@ -50,10 +47,10 @@ The `includes/` directory contains the core plugin functionality:
 
 When referring to files or directories in AI conversations, use the following format:
 
-- **@includes/plugin.php** - Main plugin class
-- **@includes/core.php** - Core functionality
+- **@includes/Plugin.php** - Main plugin class
+- **@includes/Core.php** - Core functionality
 - **@admin/lib/admin.php** - Admin functionality
 - **@admin/lib/modal.php** - Modal functionality
-- **@includes/updater.php** - Updater functionality
+- **@includes/Updater.php** - Updater functionality
 - **@admin/js/update-source-selector.js** - Update source selector JavaScript
 - **@admin/css/update-source-selector.css** - Update source selector CSS

.ai-workflows/health-dashboard-remediation.md

@@ -0,0 +1,48 @@
+# Supervisor health dashboard remediation
+
+Use this runbook when the repository supervisor health dashboard becomes stale.
+
+## Signals
+
+- The pinned supervisor issue has an old `last_refresh:` marker.
+- The stats scheduler exists and is loaded, but wrapper runs overlap or remain
+  active beyond the expected timeout.
+- Recent stats logs stop before the affected repository is updated.
+
+## Remediation
+
+1. Confirm the scheduler and stats log are present:
+
+   ```bash
+   launchctl list | grep -i aidevops-stats-wrapper
+   ls -la ~/Library/LaunchAgents/com.aidevops.aidevops-stats-wrapper.plist
+   tail -40 ~/.aidevops/logs/stats.log
+   ```
+
+2. Check for an active `stats-wrapper.sh` process that has exceeded `STATS_TIMEOUT`.
+   The default timeout is `600` seconds and is defined near the top of
+   `~/.aidevops/agents/scripts/stats-wrapper.sh`; an operator can confirm the
+   runtime value with a dry run:
+
+   ```bash
+   STATS_DRY_RUN=1 bash ~/.aidevops/agents/scripts/stats-wrapper.sh --dry-run
+   ```
+
+3. Terminate the stale wrapper process and remove the stale stats pidfile at
+   `~/.aidevops/logs/stats.pid`.
+
+4. Run one targeted health issue refresh for this repository:
+
+   ```bash
+   REPO_SLUG="<owner/repo>" \
+   REPO_PATH="<your/local/path>" \
+   bash -lc '
+   source "$HOME/.aidevops/agents/scripts/shared-constants.sh"
+   source "$HOME/.aidevops/agents/scripts/worker-lifecycle-common.sh"
+   source "$HOME/.aidevops/agents/scripts/stats-functions.sh"
+   _update_health_issue_for_repo "$REPO_SLUG" "$REPO_PATH" "" "" ""
+   '
+   ```
+
+5. Verify the pinned dashboard issue now has a fresh `last_refresh:` marker and
+   recent `updated_at` timestamp.

.ai-workflows/readme.md

@@ -10,6 +10,7 @@ This directory contains workflow documentation for AI assistants working with th
 - **feature-development.md**: Process for developing new features
 - **folder-structure.md**: Documentation of the plugin's folder structure and naming conventions
 - **git-workflow.md**: Detailed git workflow and branch management guidelines
+- **health-dashboard-remediation.md**: Supervisor health dashboard staleness triage and remediation
 - **incremental-development.md**: Time-efficient approach for incremental development and testing
 - **local-env-vars.md**: Local development environment paths and URLs
 - **multi-repo-workspace.md**: Guidelines for working in workspaces with multiple repositories

.gitattributes

@@ -98,4 +98,7 @@ reference-plugins export-ignore
 
 # Merge driver for changelog files to prevent conflicts
 CHANGELOG.md merge=union
-readme.txt merge=union
+readme.txt merge=union
+
+# Opt out of AI model training
+* ai-training=false

.gitignore

@@ -169,4 +169,5 @@ codecov.yml
 webpack.config.js
 gulpfile.js
 Gruntfile.js
-*.zip
+*.zip
+.agents/loop-state/

AGENTS.md

@@ -0,0 +1,104 @@
+# AGENTS.md — AI Agent Guide for wp-fix-plugin-does-not-exist-notices
+
+This file provides precise, verified guidance for AI agents working in this repository. Read it before editing any file to avoid `read:file_not_found` and `edit:not_read_first` errors.
+
+## Repository Purpose
+
+**Fix 'Plugin file does not exist' Notices** — a WordPress plugin that detects active plugins whose files are missing, adds them to the Plugins list with a "Remove Notice" action link, and safely removes their database references.
+
+- GitHub: `wpallstars/wp-fix-plugin-does-not-exist-notices`
+- Namespace: `WPALLSTARS\FixPluginDoesNotExistNotices`
+- Text domain: `wp-fix-plugin-does-not-exist-notices`
+- Current version: see `wp-fix-plugin-does-not-exist-notices.php` header
+
+## Exact File Map (authoritative — verified against git ls-files)
+
+**CRITICAL**: PHP class files in `includes/` use PascalCase. The docs and `require_once` paths must match exactly. On Linux (case-sensitive), wrong case = fatal error.
+
+```
+wp-fix-plugin-does-not-exist-notices.php   # Plugin entry point — sets Version, requires includes/Plugin.php
+includes/Plugin.php                         # Main Plugin class — loads dependencies, inits components
+includes/Core.php                           # Core class — all WordPress hooks and plugin logic
+includes/Updater.php                        # Updater class — handles Git Updater / WP.org update sources
+admin/lib/admin.php                         # Admin\Admin class — admin page rendering, enqueues
+admin/lib/modal.php                         # Admin\Modal class — update source selector modal
+admin/css/admin-styles.css                  # General admin styles
+admin/css/update-source-selector.css        # Styles for the update source modal
+admin/js/admin-scripts.js                   # General admin JS
+admin/js/update-source-selector.js          # JS for the update source modal
+languages/wp-fix-plugin-does-not-exist-notices.pot  # Translation template
+build.sh                                    # Build/release script
+scripts/deploy-local.sh                     # Local deployment helper
+composer.json                               # Composer config (no vendor/ committed)
+README.md                                   # Developer readme
+readme.txt                                  # WordPress.org readme (keep in sync with README.md)
+CHANGELOG.md                                # Changelog (keep in sync with README.md and readme.txt)
+```
+
+**Directories that DO NOT exist** (do not attempt to read or create files here):
+
+- `admin/images/` — does not exist
+- `admin/partials/` — does not exist
+- `admin/settings/` — does not exist
+- `admin/tools/` — does not exist
+- `vendor/` — not committed; loaded at runtime if present
+
+## Before Editing Any File
+
+1. Read the file first: `Read includes/Core.php` — not `includes/core.php` (wrong case fails).
+2. Re-read the file if another tool call may have modified it since your last read.
+3. Verify the file path with `git ls-files '<pattern>'` when uncertain.
+
+## Version Management
+
+Version appears in **four places** — all must be updated together:
+
+1. `wp-fix-plugin-does-not-exist-notices.php` — `Version:` header and `new WPALLSTARS\FixPluginDoesNotExistNotices\Plugin(__FILE__, '2.4.0')` (replace `2.4.0` with the new version)
+2. `readme.txt` — `Stable tag:` and changelog section
+3. `CHANGELOG.md` — top entry
+4. `AGENTS.md` — this file, item 1 above (replace the hardcoded version string)
+
+Note: `includes/Plugin.php` has no direct version constant; the version is passed in via the constructor call in the entry point file.
+
+`README.md` changelog section must also stay in sync with `CHANGELOG.md`.
+
+## Common Tasks
+
+### Fix a bug in core plugin logic
+
+Edit `includes/Core.php`. All WordPress hooks are registered in the constructor.
+
+### Change admin UI or settings
+
+Edit `admin/lib/admin.php` (Admin class) and/or `admin/lib/modal.php` (Modal class).
+CSS: `admin/css/admin-styles.css` or `admin/css/update-source-selector.css`.
+JS: `admin/js/admin-scripts.js` or `admin/js/update-source-selector.js`.
+
+### Bump version for a release
+
+1. Update version in `wp-fix-plugin-does-not-exist-notices.php` (both header and constructor call).
+2. Update `Stable tag:` in `readme.txt`.
+3. Add changelog entry to `readme.txt`, `CHANGELOG.md`, and `README.md`.
+4. Update the version string in `AGENTS.md` (item 1 of the Version Management list above).
+
+### Add or fix update source logic
+
+Edit `includes/Updater.php`.
+
+## Git Workflow
+
+- Branch naming: `feature/`, `fix/`, `patch/`, `refactor/` prefixes
+- One branch per issue; one PR per issue
+- Push to both `github` and `gitea` remotes
+- Do not include version numbers in branch names during development
+
+## AI Workflow Documentation
+
+Extended guidance is in `.ai-workflows/`:
+
+- `folder-structure.md` — directory layout with correct filenames
+- `git-workflow.md` — branching, commit messages, remote management
+- `feature-development.md` — feature development process
+- `bug-fixing.md` — bug investigation and fix process
+- `release-process.md` — full release checklist including Git Updater notes
+- `dev-prefs-memory.md` — persistent developer preferences

composer.json

@@ -15,7 +15,8 @@
     },
     "autoload": {
         "psr-4": {
-            "WPAllStars\\FixPluginDoesNotExistNotices\\": "includes/"
+            "WPALLSTARS\\FixPluginDoesNotExistNotices\\Admin\\": "admin/lib/",
+            "WPALLSTARS\\FixPluginDoesNotExistNotices\\": "includes/"
         }
     }
 }

includes/Plugin.php

@@ -77,6 +77,7 @@ class Plugin {
 
         $this->define_constants();
         $this->load_dependencies();
+        $this->register_autoloader();
         $this->init_components();
     }
 
@@ -97,22 +98,75 @@ class Plugin {
         }
     }
 
+    /**
+     * Register the PSR-4 autoloader
+     *
+     * Maps plugin namespaces to their corresponding directories so that
+     * new class files are loaded automatically without manual require_once calls.
+     *
+     * Optimisations applied:
+     * - Early exit when the class does not belong to this plugin's namespace,
+     *   avoiding the loop entirely for every foreign class lookup.
+     * - The namespace map is stored in a static variable so it is allocated
+     *   only once across all invocations rather than on every class lookup.
+     * - `require` is used instead of `require_once` because the autoloader is
+     *   only called for classes that are not yet defined, making the redundancy
+     *   check in `require_once` unnecessary.
+     *
+     * @return void
+     */
+    private function register_autoloader() {
+        $plugin_dir = $this->plugin_dir;
+
+        spl_autoload_register(function ($class) use ($plugin_dir) {
+            // Skip immediately if the class is not in this plugin's namespace.
+            $base_prefix = 'WPALLSTARS\\FixPluginDoesNotExistNotices\\';
+            if (strncmp($base_prefix, $class, strlen($base_prefix)) !== 0) {
+                return;
+            }
+
+            // Static map allocated once; ordered most-specific first so Admin\
+            // resolves before the root namespace.
+            static $namespace_map = null;
+            if ($namespace_map === null) {
+                $namespace_map = array(
+                    'WPALLSTARS\\FixPluginDoesNotExistNotices\\Admin\\' => 'admin/lib/',
+                    'WPALLSTARS\\FixPluginDoesNotExistNotices\\'        => 'includes/',
+                );
+            }
+
+            foreach ($namespace_map as $prefix => $relative_path) {
+                if (strncmp($prefix, $class, strlen($prefix)) !== 0) {
+                    continue;
+                }
+
+                $relative_class = substr($class, strlen($prefix));
+                $file = $plugin_dir . $relative_path . str_replace('\\', DIRECTORY_SEPARATOR, $relative_class) . '.php';
+
+                if (file_exists($file)) {
+                    require $file;
+                    return;
+                }
+            }
+        });
+    }
+
     /**
      * Load dependencies
      *
+     * Loads the Composer autoloader when available (vendor installs), registering
+     * it on the spl_autoload stack before the custom PSR-4 loader so that Composer
+     * acts as the primary resolver. Project classes without a vendor install are
+     * resolved by the autoloader registered in register_autoloader().
+     *
      * @return void
      */
     private function load_dependencies() {
-        // Load composer autoloader if it exists
+        // Load composer autoloader if it exists (vendor/ directory present).
         $autoloader = $this->plugin_dir . 'vendor/autoload.php';
         if (file_exists($autoloader)) {
             require_once $autoloader;
         }
-
-        // Load required files
-        require_once $this->plugin_dir . 'includes/core.php';
-        require_once $this->plugin_dir . 'admin/lib/admin.php';
-        require_once $this->plugin_dir . 'admin/lib/modal.php';
     }
 
     /**

wp-fix-plugin-does-not-exist-notices.php

@@ -32,7 +32,7 @@ if (!defined('WPINC')) {
 }
 
 // Load the main plugin class
-require_once plugin_dir_path(__FILE__) . 'includes/plugin.php';
+require_once plugin_dir_path(__FILE__) . 'includes/Plugin.php';
 
 // Initialize the plugin
 // This is a test change for our new workflow